Source: pbalign
Section: python
Priority: optional
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Afif Elghraoui <afif@debian.org>
Build-Depends:
	debhelper (>= 9),
	dh-python,
	python-all,
	python-setuptools,
	python-pbcore (>= 0.8.5),
	python-pbcommand (>= 0.2.0),
	python-sphinx,
	help2man,
Standards-Version: 3.9.8
Homepage: https://github.com/PacificBiosciences/pbalign
Vcs-Git: https://anonscm.debian.org/git/debian-med/pbalign.git
Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/pbalign.git

Package: pbalign
Architecture: all
Depends:
	${misc:Depends},
	${python:Depends},
	python-pbalign,
	python-pkg-resources,
	blasr (>= 5.3+0),
Recommends:
	python-pbh5tools,
	hdf5-tools,
Suggests:
	bowtie2,
	gmap,
	pbalign-doc,
Description: map Pacific Biosciences reads to reference DNA sequences
 pbalign aligns PacBio reads to reference sequences, filters aligned
 reads according to user-specific filtering criteria, and converts the
 output to either the SAM format or PacBio Compare HDF5 (e.g., .cmp.h5) 
 format.
 .
 This package is part of the SMRTAnalysis suite.

Package: python-pbalign
Architecture: all
Depends:
	${misc:Depends},
	${python:Depends},
	blasr (>= 5.3+0),
Recommends:
	python-pbh5tools,
	hdf5-tools,
Suggests:
	bowtie2,
	gmap,
	pbalign-doc,
Description: map Pacific Biosciences reads to reference DNA sequences (Python2)
 pbalign aligns PacBio reads to reference sequences, filters aligned
 reads according to user-specific filtering criteria, and converts the
 output to either the SAM format or PacBio Compare HDF5 (e.g., .cmp.h5)
 format.
 .
 pbalign is part of the SMRTAnalysis suite. This package provides the
 Python library backend.

Package: pbalign-doc
Section: doc
Architecture: all
Depends:
	${misc:Depends},
	libjs-jquery,
	libjs-underscore,
Description: documentation for pbalign
 pbalign aligns PacBio reads to reference sequences, filters aligned
 reads according to user-specific filtering criteria, and converts the
 output to either the SAM format or PacBio Compare HDF5 (e.g., .cmp.h5)
 format.
 .
 pbalign is part of the SMRTAnalysis suite. This package contains its
 documentation
