3617d0e674d84fd795283b393e7dad79 *DESCRIPTION
7db72b7e01004751c5cf9d9eb2c9122c *DEXSeq.Rproj
8f5ecb3686cb8e390a8dd474ea6ca9da *NAMESPACE
98dc2dc92a5eb11e21062da15fa2d6b6 *NEWS
e47a3d75c9ae703cd9e44688f6816db4 *R/classes.R
2240c4a8e4f0d87e6cc2eda3b87aae7b *R/coef_handling.R
67e2945ff3b4a492aeae8e1ac4c48447 *R/core.R
d41d8cd98f00b204e9800998ecf8427e *R/deprecatedFunctions.R
5ee6ad233455843b6172acce563a22fa *R/htmlReports.R
d0d5644f1dbe90f799c5d66435152a75 *R/methods.R
10368a1a9455a5d683114fac89554ca4 *R/perGeneQValue.R
d99b9314611d92824de37309eca90561 *R/visualization.R
5bd07543ed3023c096c3e0f25e6c1373 *build/vignette.rds
c2f2298be5cb2e37b33170b7f584520d *inst/CITATION
f6f974c95301ce8096b693a6f5ff5bc7 *inst/doc/DEXSeq.R
73574dfbb86228ef1a431e657a68c24a *inst/doc/DEXSeq.Rmd
610f8990978df76ade25bf46ee903354 *inst/doc/DEXSeq.html
c926e1968f5d878e591dcec64f288b27 *inst/python_scripts/dexseq_count.py
29c6d83cb1598316ef75da3f909a7334 *inst/python_scripts/dexseq_prepare_annotation.py
a2090f8477b7abbc58dc1ec5b1fe294b *man/DEXSeq-defunct.Rd
c146d108368c2e89a6fed73c330257b7 *man/DEXSeq.Rd
a0e01c77c2456eac2b2d555e0f947e13 *man/DEXSeqDataSet.Rd
b99e2437bff3f53597bd3963d77226e8 *man/DEXSeqHTML.Rd
236ce0da3cb5d827ba4e55132a70f591 *man/DEXSeqResults.Rd
bf0509816d9d96e091cdd72e3ba99734 *man/accessors.Rd
ebb495872019b5794177d3376365d5ad *man/counts.Rd
7eebb339b45800ac6e4d31371405c81a *man/estimateDispersions.Rd
fa847572798e8d9bcf4ad16d2fad984b *man/estimateExonFoldChanges.Rd
b2cf82eb78342718547563cbc345f169 *man/estimateSizeFactors.Rd
abee4a1dc77f882bbe85ee6e51ef64b2 *man/methods-gr.Rd
a1c07332ffbaf28fc3f3eb6fb35eee27 *man/otherMethods.Rd
48a576bda4c8c7b8e05f8f46eb681247 *man/perGeneQValue.Rd
53d2d14c37075bbbe84966e879cfdfc9 *man/plotDEXSeq.Rd
e6f1b38938b0ee417c4f4e08a640cefa *man/plotDispEsts.Rd
2351f6a5b949a09da289658149374ab3 *man/plotMA.Rd
6728f28941aae89a15a31543f7e76a2b *man/testForDEU.Rd
1c96f7ef78a9e536a46344646eed48b1 *tests/testthat.R
c72203847669a97a0d859fea92e5fe62 *tests/testthat/test_ddsconstructor.R
fe872b40b787b7593edacad1510ca09c *tests/testthat/test_glmgampoi.R
73574dfbb86228ef1a431e657a68c24a *vignettes/DEXSeq.Rmd
da5dbc1c51292eb005fd6c8550ccbb4f *vignettes/DEXSeq.bib
