#!/bin/bash
set -e

pkg="ggd-utils"

if [ "$AUTOPKGTEST_TMP" = "" ] ; then
  AUTOPKGTEST_TMP=`mktemp -d /tmp/${pkg}-test.XXXXXX`
  trap "rm -rf $AUTOPKGTEST_TMP" 0 INT QUIT ABRT PIPE TERM
fi

cp -a /usr/share/doc/${pkg}/examples/* $AUTOPKGTEST_TMP

cd $AUTOPKGTEST_TMP
ls
check-sort-order --genome genome_sizes.genome test_file.vcf.gz
check-sort-order --genome genome_sizes.genome test_file.bed.gz
check-sort-order --genome genome_sizes.genome test_file.gtf.gz
echo "======================================="
echo "PASS"
